| 1997 | The Rain (Supa Dupa Fly) | Missy Misdemeanor Elliott | | 1 |
| 1997 | Not Tonight | Lil’ Kim featuring Da Brat, Left Eye, Missy "Misdemeanor" Elliott and Angie Martinez | | 2 |
| 1997 | Sock It 2 Me | Missy Misdemeanor Elliott feat. Da Brat | | 3 |
| 1998 | Hit ’em Wit da Hee | Missy Misdemeanor Elliott feat. Lil’ Kim | | 4 |
| 1998 | I Want You Back | Melanie B feat. Missy “Misdemeanor” Elliott | | 2 |
| 1998 | 5 Minutes | Lil’ Mo feat. Missy Misdemeanor Elliott | | 1 |
| 1998 | Beep Me 911 | Missy Elliott featuring 702 and Magoo | | 2 |
| 1998 | Here We Come | Timbaland feat. Missy Elliott & Magoo | 5 | 2 |
| 1999 | All n My Grill | Missy Elliott | | 1 |
| 2000 | Hot Boyz | Missy Elliott | | 2 |
| 2001 | Get Ur Freak On | Missy Elliott | | 4 |
| 2001 | One Minute Man | Missy “Misdemeanor” Elliott featuring Ludacris | | 4 |
| 2001 | Lick Shots | Missy “Misdemeanor” Elliott | | 1 |
| 2002 | Take Away | Missy Elliott | | 1 |
| 2002 | 4 My People | Missy “Misdemeanor” Elliott | | 3 |
| 2002 | Work It | Missy Elliott | | 3 |
| 2002 | Oops (Oh My) | Tweet feat. Missy “Misdemeanor” Elliott | | 5 |
| 2002 | Work It | Missy Elliott | | 1 |
| 2003 | (When Kim Say) Can You Hear Me Now? | Lil’ Kim feat. Missy Elliott | | 1 |
| 2003 | Gossip Folks | Missy Elliott | | 5 |
| 2003 | Ugly | Blaque feat. Missy Elliott | | 2 |
| 2003 | Pass That Dutch | Missy Elliott | | 5 |
| 2003 | Wake Up | Missy Elliott | | 1 |
| 2003 | Cop That Shit | Timbaland & Magoo feat. Missy Elliott | | 4 |
| 2003 | Party to Damascus | Wyclef Jean feat. Missy Elliott | | 1 |
| 2004 | I'm Really Hot | Missy Elliott | | 1 |
| 2005 | 1, 2 Step | Ciara feat. Missy Elliott | | 5 |
| 2005 | Lose Control | Missy Elliott feat. Ciara & Fatman Scoop | | 5 |
| 2005 | Turn da Lights Off | Tweet feat. Missy Elliott | | 1 |
| 2005 | Lose Control | Missy Elliott | | 1 |
| 2006 | We Run This | Missy Elliott | | 1 |
| 2006 | We Run This (X-Press 2 Remixes) | Missy Elliott | | 1 |
| 2008 | Ching-A-Ling | Missy Elliott | | 2 |
| 2009 | I Could've Loved You | Jack Splash feat. Missy Elliott & Jazmine Sullivan | | 1 |
| 2009 | Whatcha Think About That | Pussycat Dolls feat. Missy Elliott | | 1 |
| 2009 | Work | Ciara feat. Missy Elliott | | 2 |
| 2009 | Fakin' It | K. Michelle feat. Missy Elliott | | 1 |
| 2009 | Get Involved | Ginuwine feat. Timbaland & Missy Elliott | 5 | 3 |
| 2012 | 9th Inning | Missy Elliott feat. Timbaland | 1 | 1 |
| 2012 | Missy Elliott | Missy Elliott feat. Timbaland | 4 | 1 |
| 2012 | Triple Threat | Missy Elliott | | 1 |
| 2015 | WTF (Where They From) | Missy Elliott feat. Pharrell Williams | | 4 |
| 2016 | Pep Rally | Missy Elliott | | 3 |
| 2016 | This Is for My Girls | Chloe & Halle | Jadagrace | Janelle Monáe | Kelly Clarkson | Kelly Rowland | Lea Michele | Missy Elliott | Zendaya | | 1 |
| 2017 | I'm Better | Missy Elliott feat. Lamb | | 2 |
| 2018 | Get It | Busta Rhymes feat. Missy Elliott & Kelly Rowland | | 1 |
| 2019 | Tempo | Lizzo feat. Missy Elliott | | 2 |
| 2019 | Don't Judge Me | Kierra Sheard feat. Missy Elliott | | 1 |
| 2019 | DripDemeanor | Missy Elliott feat. Sum 41 | | 1 |
| 2020 | ATM | Bree Runway feat. Missy Elliott | | 2 |
| 2020 | Cool Off | Missy Elliott | | 1 |
| 2020 | Why I Still Love You | Missy Elliott | | 1 |
| 2022 | Trampoline | David Guetta, Afrojack & Missy Elliott | | 1 |
| 2022 | Lobby | Anitta & Missy Elliott | | 1 |
| 2023 | RATATA | Skrillex, Missy Elliott & Mr. Oizo | | 1 |
| 2023 | Fly Girl | FLO feat. Missy Elliott | | 4 |
| — | A New Groove. A New Jean. | Madonna feat. Missy | | 0 |
